Gut microbiota and health
The human gut harbors trillions of microorganisms whose collective genomes encode a biochemical repertoire far exceeding our own, allowing them to break down dietary compounds, produce metabolites like short-chain fatty acids, and directly shape immune signaling. Researchers use metagenomic sequencing and functional assays to map which microbial species are present, what they do chemically, and how their activities shift in conditions like obesity, inflammatory bowel disease, and metabolic syndrome. A central challenge is moving from correlation to causation—establishing whether particular microbial configurations drive disease or simply accompany it. Active work is now focused on decoding the molecular dialogue between microbes and host cells, with the aim of identifying targets for dietary, probiotic, or pharmacological interventions that could restore or optimize microbial function.
- Works
- 153,179
- Total citations
- 4,618,273
- Keywords
- Gut MicrobiotaMicrobial CommunitiesShort-Chain Fatty AcidsMetagenomic AnalysisHost-Microbial InteractionsObesity-associated Microbiome
Top papers in Gut microbiota and health
Ordered by total citation count.
- DADA2: High-resolution sample inference from Illumina amplicon data↗ 35,341
- Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2↗ 23,354OA
- Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities↗ 21,617OA
- Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy↗ 20,358OA
- UPARSE: highly accurate OTU sequences from microbial amplicon reads↗ 17,094
- Metagenomic biomarker discovery and explanation↗ 16,401OA
- CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes↗ 12,473OA
- An obesity-associated gut microbiome with increased capacity for energy harvest↗ 12,330
- Structure, function and diversity of the healthy human microbiome↗ 11,819OA
- A human gut microbial gene catalogue established by metagenomic sequencing↗ 11,562OA
- Bergey's Manual of Determinative Bacteriology↗ 11,399
- Diet rapidly and reproducibly alters the human gut microbiome↗ 10,065OA
Active researchers
Top authors in this area, ranked by h-index.