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Author
Philip Hugenholtz
also known as House, Hugenholtz, P.G. (Paul), Hugenholtz, Phil
The University of Queensland · Ecogenomics (Japan) · Leiden University · Lawrence Livermore National Laboratory
About this author
Works
878
Cited by
132,831
h-index
133
i10
517
ORCID ↗
Top papers
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Donovan H. Parks, Michael Imelfort, Connor T. Skennerton, et al.
·
2015
·
Genome Research
↗ 12,473
OA
Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
Todd Z. DeSantis, Philip Hugenholtz, N. Larsen, et al.
·
2006
·
Applied and Environmental Microbiology
↗ 11,204
OA
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database
Pierre-Alain Chaumeil, Aaron J. Mussig, Philip Hugenholtz, et al.
·
2019
·
Bioinformatics
↗ 5,308
OA
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
Daniel McDonald, Morgan N. Price, Julia K. Goodrich, et al.
·
2011
·
The ISME Journal
↗ 5,300
OA
STAMP: statistical analysis of taxonomic and functional profiles
Donovan H. Parks, Gene W. Tyson, Philip Hugenholtz, et al.
·
2014
·
Bioinformatics
↗ 4,274
OA
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
Donovan H. Parks, Maria Chuvochina, David W. Waite, et al.
·
2018
·
Nature Biotechnology
↗ 3,794
Defining the core Arabidopsis thaliana root microbiome
Derek S. Lundberg, Sarah L. Lebeis, Sur Herrera Paredes, et al.
·
2012
·
Nature
↗ 2,905
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
Robert M. Bowers, Nikos C. Kyrpides, Ramūnas Stepanauskas, et al.
·
2017
·
Nature Biotechnology
↗ 2,641
OA
Insights into the phylogeny and coding potential of microbial dark matter
Christian Rinke, Patrick Schwientek, Alexander Sczyrba, et al.
·
2013
·
Nature
↗ 2,422
OA
Community structure and metabolism through reconstruction of microbial genomes from the environment
Gene W. Tyson, Jarrod Chapman, Philip Hugenholtz, et al.
·
2004
·
Nature
↗ 2,418
Impact of Culture-Independent Studies on the Emerging Phylogenetic View of Bacterial Diversity
Philip Hugenholtz, Brett M. Goebel, Norman R. Pace
·
1998
·
Journal of Bacteriology
↗ 2,413
OA
GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy
Donovan H. Parks, Maria Chuvochina, Christian Rinke, et al.
·
2021
·
Nucleic Acids Research
↗ 2,375
OA