Fabian J. Theis

SCANPY: large-scale single-cell gene expression data analysis

Generalizing RNA velocity to transient cell states through dynamical modeling

SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues

Current best practices in single‐cell RNA‐seq analysis: a tutorial

PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells

An atlas of genetic influences on human blood metabolites

Diffusion pseudotime robustly reconstructs lineage branching

Eleven grand challenges in single-cell data science

Benchmarking atlas-level data integration in single-cell genomics

Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells

Deep learning: new computational modelling techniques for genomics

Single-cell RNA-seq denoising using a deep count autoencoder